mt_batch: Correct for batch-effects in 'mmt' objects based on...
In TYMichaelsen/mmtravis: Tools for analysing (meta)transcriptomics data
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Correct for batch-effects in mmt objects based on variable/sample metadata.
Usage
1
Arguments
mmt
(required) Data list as loaded with mt_load.
batch
(required) Variable in metadata to perform batch-correct on.
method
(optional) Specify the method for batch-correction. One of:
-
"ComBat": (default) See ComBat for details and additional parameter settings.
...
Additional parameters for the specified method.
Details
The function mt_batch tries to eliminate batch-effects.
Value
A modifed mt object
Author(s)
Thomas Yssing Michaelsen tym@bio.aau.dk
Examples
1
2
3
4
## Not run:
# EXAMPLE GOES HERE
## End(Not run)
TYMichaelsen/mmtravis documentation built on Aug. 5, 2019, 10:48 a.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Correct for batch-effects in mmt objects based on variable/sample metadata.
Usage
1 |
Arguments
mmt |
(required) Data list as loaded with |
batch |
(required) Variable in metadata to perform batch-correct on. |
method |
(optional) Specify the method for batch-correction. One of:
|
... |
Additional parameters for the specified method. |
Details
The function mt_batch tries to eliminate batch-effects.
Value
A modifed mt object
Author(s)
Thomas Yssing Michaelsen tym@bio.aau.dk
Examples
1 2 3 4 | ## Not run:
# EXAMPLE GOES HERE
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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