Files in TYMichaelsen/mmtravis

Tools for analysing (meta)transcriptomics data

.Rbuildignore

.gitattributes

.gitignore

DESCRIPTION

NAMESPACE

R/internals.R R/mt_batch.R R/mt_diffexprs.R R/mt_dumpDE.R R/mt_enrichCOG.R R/mt_enrichKO.R R/mt_load.R R/mt_loadMetaT.R R/mt_phi.R R/mt_plotpairs.R R/mt_stackbar.R R/mt_subset.R

R/sysdata.rda

R/vis_boxplot.R R/vis_ordinate.R README.Rmd README.md

data-raw/COG_data/cognames2003-2014.tab

data-raw/COG_data/fun2003-2014.tab

data-raw/GenerateData.R

data-raw/KO_data/all_ko.tsv

data-raw/KO_data/commands.txt

data-raw/KO_data/compound_names.tsv

data-raw/KO_data/compound_to_reaction.tsv

data-raw/KO_data/ec_names.tsv

data-raw/KO_data/ec_to_ko.tsv

data-raw/KO_data/module_names.tsv

data-raw/KO_data/module_to_ko.tsv

data-raw/KO_data/pathway_names.tsv

data-raw/KO_data/pathway_to_ko.tsv

data-raw/KO_data/reaction-class_names.tsv

data-raw/KO_data/reaction-class_to_ko.tsv

data-raw/KO_data/reaction_names.tsv

data-raw/KO_data/reaction_to_ko.tsv

data/example_mmt.rda

data/example_mtdata.rda

data/example_mtgene.rda

data/example_mtmeta.rda

docs/authors.html

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/grapes-w-slash-o-grapes.html

docs/reference/index.html

docs/reference/mt_batch.html

docs/reference/mt_diffexprs.html

docs/reference/mt_dumpDE.html

docs/reference/mt_gather.html

docs/reference/mt_load.html

docs/reference/mt_loadMetaT.html

docs/reference/mt_plotpairs.html

docs/reference/mt_stackbar.html

docs/reference/mt_stattab.html

docs/reference/mt_subset.html

docs/reference/print.mmt.html

docs/reference/setroworder.html

docs/reference/vis_boxplot.html

docs/reference/vis_ordinate.html

man/grapes-w-slash-o-grapes.Rd man/mt_GenomeFrequencyMatrix.Rd man/mt_batch.Rd man/mt_diffexprs.Rd man/mt_dumpDE.Rd man/mt_enrichCOG.Rd man/mt_enrichKO.Rd man/mt_gather.Rd man/mt_load.Rd man/mt_loadMetaT.Rd man/mt_phi.Rd man/mt_plotpairs.Rd man/mt_stackbar.Rd man/mt_subset.Rd man/print.mmt.Rd man/setroworder.Rd man/test_pathway.Rd man/vis_boxplot.Rd man/vis_ordinate.Rd

mmtravis.Rproj

test/CP361_metadata.xlsx

test/DT_subset.R

test/VFAexperiments/KOterms.txt

test/VFAexperiments/counts_ill.txt

test/VFAexperiments/seqstat.txt

test/counts_CP361.txt

test/counts_bin3.txt

test/counts_old.txt

test/functions.R test/junk_code.R

test/metadata.xlsx

test/mt_stattab.R

test/refs.bib

test/seqstat_CP361.txt

test/seqstat_old.txt

test/test.R

test/testKO/KOlist_bins.rds

test/testKO/Module_steps.tsv

test/testKO/test.tsv

test/testKO/testKO.R test/test_R6stuff.R test/vis_heatmap.R

TYMichaelsen/mmtravis documentation built on Aug. 5, 2019, 10:48 a.m.