test_pathway: performs a hypergeometric test on a set of genes (internal...
In TYMichaelsen/mmtravis: Tools for analysing (meta)transcriptomics data
Description
Usage
Arguments
Value
Author(s)
Description
performs a hypergeometric test on a set of genes (internal function)
Usage
1
test_pathway(q_genes, p_genes, u_genes, alternative = "greater")
Arguments
q_genes
(required) genes in query.
p_genes
(required) genes in pathway of interest.
u_genes
(required) genes in universe.
alternative
(required) test for enrichment ('greater'), depletion ('less') or both ('two.sided').
Value
A named vector.
Author(s)
Thomas Yssing Michaelsen tym@bio.aau.dk
TYMichaelsen/mmtravis documentation built on Aug. 5, 2019, 10:48 a.m.
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Description Usage Arguments Value Author(s)
Description
performs a hypergeometric test on a set of genes (internal function)
Usage
1 | test_pathway(q_genes, p_genes, u_genes, alternative = "greater")
|
Arguments
q_genes |
(required) genes in query. |
p_genes |
(required) genes in pathway of interest. |
u_genes |
(required) genes in universe. |
alternative |
(required) test for enrichment ('greater'), depletion ('less') or both ('two.sided'). |
Value
A named vector.
Author(s)
Thomas Yssing Michaelsen tym@bio.aau.dk
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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