annotate_hierarchy: Make hierarchical named groups from SingleR annotation
In Terkild/scutility: Utility Functions For Multi-modal Single-cell Analysis
View source: R/annotate_cells.R
annotate_hierarchy R Documentation
Make hierarchical named groups from SingleR annotation
Description
Only "MonacoImmuneData" supported at the moment.
Usage
annotate_hierarchy(group, reference)
Arguments
group
label.fine annotation from SingleR
reference
reference character string matching name of dataset to compare against (uses a selection from celldex package; default "MonacoImmuneData" covers most populations in PBMC). Alternatively, a custom SummarizedExperiment can be provided.
Value
list of hierarical cell type assignments
Terkild/scutility documentation built on Jan. 16, 2025, 5:28 p.m.
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View source: R/annotate_cells.R
| annotate_hierarchy | R Documentation |
Make hierarchical named groups from SingleR annotation
Description
Only "MonacoImmuneData" supported at the moment.
Usage
annotate_hierarchy(group, reference)
Arguments
group |
label.fine annotation from SingleR |
reference |
reference character string matching name of dataset to compare against (uses a selection from celldex package; default "MonacoImmuneData" covers most populations in PBMC). Alternatively, a custom SummarizedExperiment can be provided. |
Value
list of hierarical cell type assignments
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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