plot_quadrants: Plot quadrants

In Terkild/scutility: Utility Functions For Multi-modal Single-cell Analysis

Plot quadrants

Description

Plot quadrants

Usage

plot_quadrants(
  plotData,
  x,
  y,
  color,
  wrap = NULL,
  trans = "log1p",
  breaks = c(0, 1, 2, 3, 5, 10, 25, 50, 100, 200, 500, 1000),
  threshold_x = 0.5,
  threshold_y = 0.5,
  point_size = 0.25,
  point_alpha = 0.5,
  text_pos_lower = log1p(-0.25),
  jitter = position_jitter(width = 0.18, height = 0.18, seed = 124),
  rasterise = FALSE,
  rasterise_dev = "cairo",
  rasterise_dpi = 300,
  rasterise_scale = 1
)

Arguments

plotData	data frame containing data to be plotted
x	column name for x data
y	column name for y data
color	column name for colouring
wrap	column name for wrapping plot
trans	transformation function for x and y scales (log1p default)
breaks	breaks for x and y scales
threshold_x	x gating threshold
threshold_y	y gating threshold
point_size	Size of individual points
point_alpha	Alpha level of each point
text_pos_lower	text position
jitter	jitter function for geom_points
rasterise	Should points be rasterised (ggrastr)?
rasterise_dev	What device should be used for rasterisation?
rasterise_dpi	What DPI should be used for rasterisation?
rasterise_scale	What scale should be used for rasterisation?

Value

ggplot

Terkild/scutility documentation built on Jan. 16, 2025, 5:28 p.m.