seurat_dimred_cluster_labels: Make labels for groups in DimRed plots

In Terkild/scutility: Utility Functions For Multi-modal Single-cell Analysis

Make labels for groups in DimRed plots

Description

Assign labels to positions in reduced dimensional space. Can be used to label clusters by other meta.data than their coloring.

Usage

seurat_dimred_cluster_labels(
  object,
  reduction = NULL,
  dims = c(1, 2),
  group.by = "ident",
  FUN = median
)

Arguments

object	Seurat object
reduction	Label of reduction object to use (uses the last created reduction by default)
dims	Which dimensions should be used?
group.by	Meta data column to label clusters
FUN	Function called on reduced dimensions to calculate label position

Value

tibble of labels and their positions

Terkild/scutility documentation built on Jan. 16, 2025, 5:28 p.m.