seurat_dimred_encircle_add: Encircle with Seurat meta.data

In Terkild/scutility: Utility Functions For Multi-modal Single-cell Analysis

Encircle with Seurat meta.data

Description

Encircle by Kernel Density Estimate contours

Usage

seurat_dimred_encircle_add(
  object,
  reduction = NULL,
  group.by = NULL,
  split.by = NULL,
  cells = NULL,
  ...
)

Arguments

object	Seurat object
reduction	Name of reduction in Seurat object. Uses last in list by default.
group.by	Name of meta data column used for grouping contours
split.by	Name of meta data column included in the ggplot data.frame (for usage in splitting)
cells	Subset of cells to be used for calculating KDE contours. Cell barcodes or indices.

Value

list of ggplot elements

Terkild/scutility documentation built on Jan. 16, 2025, 5:28 p.m.