seurat_plot_connected_barplot: Plot connected barplot from seurat object

In Terkild/scutility: Utility Functions For Multi-modal Single-cell Analysis

Plot connected barplot from seurat object

Description

Plot connected barplot from seurat object

Usage

seurat_plot_connected_barplot(
  object,
  group.by = "ident",
  split.by,
  wrap.by = NULL,
  normalize_to = NULL,
  cells = c(),
  combine = TRUE,
  wrap_add = 0.5,
  ...
)

Arguments

object	Seurat object
group.by	Meta data column containing population/cluster assignment (y-axis)
split.by	Meta data column containing group or sample assignment (x-axis)
wrap.by	Meta data column to split into multiple independent plots (i.e. patient or tissue information)
normalize_to	Data frame containing normalization factor (i.e. total cell count from sample) as first column, split.to (and wrap.by) in following columns. Important that colnames match split.to and wrap.by names
cells	Vector of rows or cell barcodes to be included in plot.
combine	Boolean of whether multiple plots (when wrap.by is set) should be combined into a single plot (using cowplot)
wrap_add	Integer of how much width should be allocated to y-axis text relative to the with of a bar (for combining plots)

Value

ggplot object or list of ggplot objects

Terkild/scutility documentation built on Jan. 16, 2025, 5:28 p.m.