aac_to_snv_ids: Get SNVs that cause an amino acid change
In Townsend-Lab-Yale/cancereffectsizeR: Calculate Cancer Effect Size
aac_to_snv_ids R Documentation
Get SNVs that cause an amino acid change
Description
An internal function to figure out the SNVs that can cause a given amino acid substitution in a transcript
Usage
aac_to_snv_ids(refcds_entry_name, aa_pos, aa_alt, bsg, refcds)
Arguments
aa_pos
Integer position of substitution on the transcript.
aa_alt
Identity of substitution, either a three-letter code ("Lys") or "STOP"
bsg
A BSgenome object for the genome build associated with the RefCDS entry
refcds_entry
A RefCDS entry for the relevant transcript
Townsend-Lab-Yale/cancereffectsizeR documentation built on April 28, 2024, 6:14 p.m.
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| aac_to_snv_ids | R Documentation |
Get SNVs that cause an amino acid change
Description
An internal function to figure out the SNVs that can cause a given amino acid substitution in a transcript
Usage
aac_to_snv_ids(refcds_entry_name, aa_pos, aa_alt, bsg, refcds)
Arguments
aa_pos |
Integer position of substitution on the transcript. |
aa_alt |
Identity of substitution, either a three-letter code ("Lys") or "STOP" |
bsg |
A BSgenome object for the genome build associated with the RefCDS entry |
refcds_entry |
A RefCDS entry for the relevant transcript |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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