add_covered_regions: add_covered_regions

In Townsend-Lab-Yale/cancereffectsizeR: Calculate Cancer Effect Size

add_covered_regions

Description

add_covered_regions

Usage

add_covered_regions(
  target_cesa = NULL,
  source_cesa = NULL,
  covered_regions = NULL,
  covered_regions_name = NULL,
  coverage_type = NULL,
  covered_regions_padding = 0
)

Arguments

target_cesa	CESAnalysis with annotated variants that the covered regions will be added to
source_cesa	Another CESAnalysis to copy all covered regions from
covered_regions	A GRanges object or BED file path with genome build matching the target_cesa, if not using source_cesa
covered_regions_name	A name to identify the covered regions, if not using source_cesa
coverage_type	exome, genome, or targeted (if not using source_cesa)
covered_regions_padding	optionally, add +/- this many bp to each interval in covered_regions

Value

CESAnalysis given in target_cesa, with the new covered regions added

Townsend-Lab-Yale/cancereffectsizeR documentation built on April 28, 2024, 6:14 p.m.