annotate_variants: Annotate variants

In Townsend-Lab-Yale/cancereffectsizeR: Calculate Cancer Effect Size

Annotate variants

Description

Annotates CESAnalysis MAF data with reference genome and gene data; called by load_maf

Usage

annotate_variants(refset = NULL, variants = NULL)

Arguments

refset	CES reference data set (e.g., from the ces.refset.hg19 data package)
variants	MAF-like data.table of variants (e.g., as generated by preload_maf())

Townsend-Lab-Yale/cancereffectsizeR documentation built on April 28, 2024, 6:14 p.m.