dot-add_covered_regions: .add_covered_regions

In Townsend-Lab-Yale/cancereffectsizeR: Calculate Cancer Effect Size

.add_covered_regions

Description

.add_covered_regions

Usage

.add_covered_regions(
  cesa,
  coverage_type,
  covered_regions,
  covered_regions_name,
  covered_regions_padding
)

Arguments

coverage_type	exome or targeted, if not using source_cesa
covered_regions	A GRanges object or BED file path with genome build matching the target_cesa, if not using source_cesa
covered_regions_name	A name to identify the covered regions, if not using source_cesa
covered_regions_padding	optionally, add +/- this many bp to each interval in covered_regions

Value

CESAnalysis given in target_cesa, with the new covered regions added

Townsend-Lab-Yale/cancereffectsizeR documentation built on April 28, 2024, 6:14 p.m.