assign_gr_to_coverage: assign_gr_to_coverage
In Townsend-Lab-Yale/cancereffectsizeR: Calculate Cancer Effect Size
View source: R/covered_regions_handling.R
assign_gr_to_coverage R Documentation
assign_gr_to_coverage
Description
Adds a validated GRanges object as a CESAnalysis's coverage set. Called by
add_covered_regions() after various checks pass.
Usage
assign_gr_to_coverage(cesa, gr, covered_regions_name, coverage_type)
Arguments
cesa
CESAnalysis to receive the gr
gr
GRanges
covered_regions_name
unique name for the covered regions
coverage_type
"exome" or "targeted"
Details
Special handling occurs if covered_regions_name is "exome+".
Townsend-Lab-Yale/cancereffectsizeR documentation built on April 28, 2024, 6:14 p.m.
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View source: R/covered_regions_handling.R
| assign_gr_to_coverage | R Documentation |
assign_gr_to_coverage
Description
Adds a validated GRanges object as a CESAnalysis's coverage set. Called by add_covered_regions() after various checks pass.
Usage
assign_gr_to_coverage(cesa, gr, covered_regions_name, coverage_type)
Arguments
cesa |
CESAnalysis to receive the gr |
gr |
GRanges |
covered_regions_name |
unique name for the covered regions |
coverage_type |
"exome" or "targeted" |
Details
Special handling occurs if covered_regions_name is "exome+".
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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