API for USCDTG/tLOH
Assessment of evidence for LOH in spatial transcriptomics pre-processed data using Bayes factor calculations
| Global functions | |
|---|---|
| aggregateCHRPlot | Man page |
| alleleFrequencyPlot | Man page |
| cols | Man page |
| dataframe | Man page |
| documentErrorRegions | Man page |
| hiddenMarkovAnalysis | Man page |
| humanGBMsampleAC | Man page |
| initialStartProbabilities | Man page |
| marginalLikelihoodM1 | Man page Source code |
| marginalLikelihoodM2 | Man page Source code |
| marginalM1Calc | Man page Source code |
| marginalM2CalcBHET | Man page Source code |
| marginalM2CalcBLOH | Man page Source code |
| modePeakCalc | Man page |
| newValue | Man page |
| prepareHMMdataframes | Man page |
| regionAnalysis | Man page |
| regionFinalize | Man page |
| removeOutlierFromCalc | Man page Source code |
| rows | Man page |
| runHMM_1 | Man page |
| runHMM_2 | Man page |
| runHMM_3 | Man page |
| splitByChromosome | Man page |
| summarizeRegions1 | Man page |
| summarizeRegions2 | Man page |
| tLOHCalc | Man page Source code |
| tLOHCalcUpdate | Man page |
| tLOHDataImport | Man page Source code |
