regionFinalize: Summary of HMM Regions

In USCDTG/tLOH: Assessment of evidence for LOH in spatial transcriptomics pre-processed data using Bayes factor calculations

Summary of HMM Regions

Description

Final metrics and summary for regions

Usage

regionFinalize(finalList1)

Arguments

finalList1

List of dataframes output by the regionAnalysis function

Value

Output is a table containing all calculations from the bayes factor and HMM analysis

Author(s)

Michelle Webb

Examples

## Not run: 
data('humanGBMsampleAC')
data('initialStartProbabilities')
df <- tLOHCalcUpdate(humanGBMsampleAC,1.25,1.25,500,500,4)
dataframeList <- prepareHMMdataframes(df)
trProbs <- cbind(c(0.8999,0.1001),c(0.1001,0.8999))
dataframeList2 <- runHMM_1(dataframeList, initialStartProbabilities, trProbs)
dataframeList3 <- runHMM_2(dataframeList2)
output <- runHMM_3(dataframeList3)
intermediate <- regionAnalysis(dataframeList,output)
final <- regionFinalize(intermediate)

## End(Not run)

USCDTG/tLOH documentation built on Oct. 23, 2022, 8:05 p.m.