aggregateCHRPlot: Visualization of data output from the tLOHCalc function,...

In USCDTG/tLOH: Assessment of evidence for LOH in spatial transcriptomics pre-processed data using Bayes factor calculations

Visualization of data output from the tLOHCalc function, aggregated per chromosome

Description

Output is a plot of the sum of Log10(1/K) values (K is a Bayes factor) per chromosome for each cluster. The dotted line at y=3 represents threshold for substantial evidence toward Model 2

Arguments

df	An input dataframe with merged cluster data output by tLOHCalc
sample	Name of sample for plot title

Value

Output is a plot where the y axis is sum of Log10(1/K) values (K is a Bayes factor) per chromosome and the x axis is chromosome

Author(s)

Michelle Webb

Examples

data('humanGBMsampleAC')
df <- tLOHCalc(humanGBMsampleAC)
aggregateCHRPlot(df,"Example")

USCDTG/tLOH documentation built on Dec. 19, 2024, 10:24 p.m.