humanGBMsampleAC: Imported dataset of a human glioblastoma spatial...
In USCDTG/tLOH: Assessment of evidence for LOH in spatial transcriptomics pre-processed data using Bayes factor calculations
humanGBMsampleAC R Documentation
Imported dataset of a human glioblastoma spatial transcriptomics sample
processed with tLOHImportData.
Description
A dataset of a human glioblastoma sample containing the allele
count (AC) information for 9 spatial transcriptomics clusters
Usage
data("humanGBMsampleAC")
Format
A data frame with 34601 rows and 7 variables:
- rsID
dbSNP rs identifier
- CLUSTER
cluster number
- TOTAL
total number of counts
- REF
counts for the reference allele
- ALT
counts for the alternative allele
- CHR
chromosome number
- POS
genomic position
Source
Craig Lab data repository
Examples
data("humanGBMsampleAC")
USCDTG/tLOH documentation built on Oct. 23, 2022, 8:05 p.m.
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| humanGBMsampleAC | R Documentation |
Imported dataset of a human glioblastoma spatial transcriptomics sample processed with tLOHImportData.
Description
A dataset of a human glioblastoma sample containing the allele count (AC) information for 9 spatial transcriptomics clusters
Usage
data("humanGBMsampleAC")
Format
A data frame with 34601 rows and 7 variables:
- rsID
dbSNP rs identifier
- CLUSTER
cluster number
- TOTAL
total number of counts
- REF
counts for the reference allele
- ALT
counts for the alternative allele
- CHR
chromosome number
- POS
genomic position
Source
Craig Lab data repository
Examples
data("humanGBMsampleAC")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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