prepareHMMdataframes: Prepare dataframes for HMM analysis

prepareHMMdataframesR Documentation

Prepare dataframes for HMM analysis

Description

Split output from tLOHCalc or tLOHCalcUpdate into a list of cluster and chromosome separated dataframes. Applies an ordered quantile normalization on the bayes factor K values in each dataset.

Usage

prepareHMMdataframes(importedData)

Arguments

importedData

Input dataframe generated from the tLOHCalc or tLOHCalcUpdate function

Value

Output is a list of dataframes separated by chromosome and cluster

Author(s)

Michelle Webb

Examples

data('humanGBMsampleAC')
df <- tLOHCalcUpdate(humanGBMsampleAC,1.25,1.25,500,500,4)
output <- prepareHMMdataframes(df)

USCDTG/tLOH documentation built on Oct. 23, 2022, 8:05 p.m.