alleleFrequencyPlot: Visualization of data output from the tLOHCalc function

In USCDTG/tLOH: Assessment of evidence for LOH in spatial transcriptomics pre-processed data using Bayes factor calculations

Visualization of data output from the tLOHCalc function

Description

Creates a plot with panels for each cluster. The x-axis is chromosome, y-axis is allele frequency. Point color is Log10(1/K) where K is a Bayes factor

Arguments

df	An input dataframe with merged cluster data
sample	Name of sample for plot title

Value

Output is a plot of allele frequency for each cluster. Can be assigned to object and visualized individually. For each panel, the y axis has a min of 0 and max of 1

Author(s)

Michelle Webb

Examples

data('humanGBMsampleAC')
df <- tLOHCalc(humanGBMsampleAC)
alleleFrequencyPlot(df,"Example")

USCDTG/tLOH documentation built on Oct. 23, 2022, 8:05 p.m.