Files in USCDTG/tLOH
Assessment of evidence for LOH in spatial transcriptomics pre-processed data using Bayes factor calculations
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/data.R
R/functions.R
R/globals.R
README.md
data/humanGBMsampleAC.rda
data/initialStartProbabilities.rda
inst/CITATION
inst/extdata/Example.vcf.gz
inst/extdata/Example_aggregateCHRPlot.png
inst/extdata/Example_alleleFrequencyPlot.png
inst/extdata/bayesFactor.png
man/aggregateCHRPlot.Rd
man/alleleFrequencyPlot.Rd
man/documentErrorRegions.Rd
man/hiddenMarkovAnalysis.Rd
man/humanGBMsampleAC.Rd
man/initialStartProbabilities.Rd
man/marginalLikelihoodM1.Rd
man/marginalLikelihoodM2.Rd
man/marginalM1Calc.Rd
man/marginalM2CalcBHET.Rd
man/marginalM2CalcBLOH.Rd
man/modePeakCalc.Rd
man/prepareHMMdataframes.Rd
man/regionAnalysis.Rd
man/regionFinalize.Rd
man/removeOutlierFromCalc.Rd
man/runHMM_1.Rd
man/runHMM_2.Rd
man/runHMM_3.Rd
man/splitByChromosome.Rd
man/summarizeRegions1.Rd
man/summarizeRegions2.Rd
man/tLOHCalc.Rd
man/tLOHCalcUpdate.Rd
man/tLOHDataImport.Rd
vignettes/tLOH_vignette.Rmd
