The FastqcData Object Class \lifecyclestable
Path to a single zip archive or extracted folder for a individual FastQC report.
This object class is the main object required for generating plots
and tables. Instantiation will first test for a compressed file (or
extracted directory) with the correct data structure, and will then parse
all the data into R as a
FastqcData object. FastQC modules are
contained as individual slots, which can be viewed using
Individual modules can be returned using the function
and specifying which module is required. See
An object of class FastqcData
Summary of PASS/WARN/FAIL status for each module
The Basic_Statstics table from the top of a FastQC html report
The underlying data from the Per_base_sequence_quality module
The underlying data from the Per_sequence_quality_scores module
The underlying data from the Per_base_sequence_content module
The underlying data from the Per_sequence_GC_content module
The underlying data from the Per_base_N_content module
The underlying data from the Sequence_Length_Distribution module
The underlying data from the Sequence_Duplication_Levels module
The underlying data from the Overrepresented_sequences module
The underlying data from the Adapter_Content module
The underlying data from the Kmer_Content module
Estimate taken from the plot data for Sequence_Duplication_Levels. Only included in later versions of FastQC
The version of FastQC used for generation of the report (if available)
Path to the FastQC report#'
1 2 3 4 5 6 7
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.