Get the maximum Adapter Content across one or more FASTQC reports
Can be a
This will extract the
Adapter_Content module from the
supplied object, and provide a
tibble with the final value for each
tibble object containing the percent of reads with each
adapter type at the final position
1 2 3 4 5 6 7 8 9
# Get the files included with the package packageDir <- system.file("extdata", package = "ngsReports") fl <- list.files(packageDir, pattern = "fastqc.zip", full.names = TRUE) # Load the FASTQC data as a FastqcDataList object fdl <- FastqcDataList(fl) # Get the maxAdapterContent maxAdapterContent(fdl)
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