FastqcDataList: The FastqcDataList Object Class

Description Usage Arguments Value Slots Examples

View source: R/FastqcDataList.R

Description

The FastqcDataList Object Class \lifecyclestable

Usage

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Arguments

x

Character vector of file paths specifying paths to FastQC reports

Value

An object of class FastqcDataList

Slots

...

this can either be a single character vector of paths to FASTQC files, or several instances of .FastqcFile objects

Examples

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# Get the files included with the package
packageDir <- system.file("extdata", package = "ngsReports")
fl <- list.files(packageDir, pattern = "fastqc.zip", full.names = TRUE)

# Load the FASTQC data as a FastqcDataList object
fdl <- FastqcDataList(fl)
fdl

UofABioinformaticsHub/fastqcReports documentation built on Nov. 21, 2020, 7:44 p.m.