dot-makePwfGradient: Construct a gradient using PwfCols

In UofABioinformaticsHub/fastqcReports: Load FastqQC reports and other NGS related files

Construct a gradient using PwfCols

Description

Construct a gradient using PwfCols

Usage

.makePwfGradient(
  vals,
  pwfCols,
  breaks = c(0, 5, 10, 100),
  passLow = TRUE,
  na.value = "white"
)

Arguments

vals	The values which need to have the scale generated
pwfCols	An object of class PwfCols
breaks	The breaks for the PWF bins
passLow	Is the PASS category at the low or high end of the numeric range
na.value	The colour to plot for missing values

Details

This constructs a list of arguments for passing to scale_fill_gradientn() using the values contained in the fill aesthetic and the supplied breaks for PASS/WARN/FAIL criteria.

Value

Returns a ggplot list

UofABioinformaticsHub/fastqcReports documentation built on July 23, 2024, 3:26 p.m.