API for UofABioinformaticsHub/fastqcReports
Load FastqQC reports and other NGS related files

Global functions
Adapter_Content Man page Man page Man page Man page Man page
Adapter_Content,FastqcData-method Man page
Adapter_Content,FastqcDataList-method Man page
Adapter_Content,FastqcFile-method Man page
Adapter_Content,FastqcFileList-method Man page
Adapter_Content,character-method Man page
Basic_Statistics Man page Man page Man page Man page Man page
Basic_Statistics,FastqcData-method Man page
Basic_Statistics,FastqcDataList-method Man page
Basic_Statistics,FastqcFile-method Man page
Basic_Statistics,FastqcFileList-method Man page
Basic_Statistics,character-method Man page
FastqcDataList-class Man page
FastqcFile Man page Man page
FastqcFile,character-method Man page
FastqcFile-class Man page
FastqcFileList Man page Man page Man page
FastqcFileList,character-method Man page
FastqcFileList,list-method Man page
FastqcFileList-class Man page
Kmer_Content Man page Man page Man page Man page Man page
Kmer_Content,FastqcData-method Man page
Kmer_Content,FastqcDataList-method Man page
Kmer_Content,FastqcFile-method Man page
Kmer_Content,FastqcFileList-method Man page
Kmer_Content,character-method Man page
Overrepresented_sequences Man page Man page Man page Man page Man page
Overrepresented_sequences,FastqcData-method Man page
Overrepresented_sequences,FastqcDataList-method Man page
Overrepresented_sequences,FastqcFile-method Man page
Overrepresented_sequences,FastqcFileList-method Man page
Overrepresented_sequences,character-method Man page
Per_base_N_content Man page Man page Man page Man page Man page
Per_base_N_content,FastqcData-method Man page
Per_base_N_content,FastqcDataList-method Man page
Per_base_N_content,FastqcFile-method Man page
Per_base_N_content,FastqcFileList-method Man page
Per_base_N_content,character-method Man page
Per_base_sequence_content Man page Man page Man page Man page Man page
Per_base_sequence_content,FastqcData-method Man page
Per_base_sequence_content,FastqcDataList-method Man page
Per_base_sequence_content,FastqcFile-method Man page
Per_base_sequence_content,FastqcFileList-method Man page
Per_base_sequence_content,character-method Man page
Per_base_sequence_quality Man page Man page Man page Man page Man page
Per_base_sequence_quality,FastqcData-method Man page
Per_base_sequence_quality,FastqcDataList-method Man page
Per_base_sequence_quality,FastqcFile-method Man page
Per_base_sequence_quality,FastqcFileList-method Man page
Per_base_sequence_quality,character-method Man page
Per_sequence_GC_content Man page Man page Man page Man page Man page
Per_sequence_GC_content,FastqcData-method Man page
Per_sequence_GC_content,FastqcDataList-method Man page
Per_sequence_GC_content,FastqcFile-method Man page
Per_sequence_GC_content,FastqcFileList-method Man page
Per_sequence_GC_content,character-method Man page
Per_sequence_quality_scores Man page Man page Man page Man page Man page
Per_sequence_quality_scores,FastqcData-method Man page
Per_sequence_quality_scores,FastqcDataList-method Man page
Per_sequence_quality_scores,FastqcFile-method Man page
Per_sequence_quality_scores,FastqcFileList-method Man page
Per_sequence_quality_scores,character-method Man page
Per_tile_sequence_quality Man page Man page Man page Man page Man page
Per_tile_sequence_quality,FastqcData-method Man page
Per_tile_sequence_quality,FastqcDataList-method Man page
Per_tile_sequence_quality,FastqcFile-method Man page
Per_tile_sequence_quality,FastqcFileList-method Man page
Per_tile_sequence_quality,character-method Man page
PwfCols Man page
PwfCols-class Man page
Sequence_Duplication_Levels Man page Man page Man page Man page Man page
Sequence_Duplication_Levels,FastqcData-method Man page
Sequence_Duplication_Levels,FastqcDataList-method Man page
Sequence_Duplication_Levels,FastqcFile-method Man page
Sequence_Duplication_Levels,FastqcFileList-method Man page
Sequence_Duplication_Levels,character-method Man page
Sequence_Length_Distribution Man page Man page Man page Man page Man page
Sequence_Length_Distribution,FastqcData-method Man page
Sequence_Length_Distribution,FastqcDataList-method Man page
Sequence_Length_Distribution,FastqcFile-method Man page
Sequence_Length_Distribution,FastqcFileList-method Man page
Sequence_Length_Distribution,character-method Man page
TheoreticalGC-class Man page
Total_Deduplicated_Percentage Man page Man page Man page Man page Man page
Total_Deduplicated_Percentage,FastqcData-method Man page
Total_Deduplicated_Percentage,FastqcDataList-method Man page
Total_Deduplicated_Percentage,FastqcFile-method Man page
Total_Deduplicated_Percentage,FastqcFileList-method Man page
Total_Deduplicated_Percentage,character-method Man page
Version Man page Man page
Version,FastqcData-method Man page
Version,FastqcDataList-method Man page
[ Man page Man page Man page
[,FastqcDataList,ANY,missing,ANY-method Man page
[,FastqcDataList,ANY,missing-method Man page
[,FastqcFileList,ANY,missing,ANY-method Man page
[,FastqcFileList,ANY,missing-method Man page
[,FastqcFileList,character,missing,ANY-method Man page
[,FastqcFileList,character,missing-method Man page
[[ Man page
[[,FastqcFileList,character,missing-method Man page
emptyPlot Man page Source code
exportOverrepresented Man page
exportOverrepresented,FastqcData Man page
exportOverrepresented,FastqcData-method Man page
exportOverrepresented,FastqcDataList Man page
exportOverrepresented,FastqcDataList-method Man page
fastqcShiny Man page Source code
fileName Man page Man page Man page Man page
fileName,FastqcData-method Man page
fileName,FastqcDataList-method Man page
fileName,FastqcFile-method Man page
fileName,FastqcFileList-method Man page
gcTheoretical Man page
genomes Man page
genomes,TheoreticalGC-method Man page
getAdapterContent Source code
getBasicStatistics Source code
getColours Man page Man page
getColours,PwfCols-method Man page
getFastqcData Man page Man page Man page Man page Man page
getFastqcData,FastqcFile-method Man page
getFastqcData,FastqcFileList-method Man page
getFastqcData,NULL-method Man page
getFastqcData,character-method Man page
getGC Man page
getGC,TheoreticalGC-method Man page
getKmerContent Source code
getOverrepSeq Source code
getPerBaseNContent Source code
getPerBaseSeqContent Source code
getPerBaseSeqQuals Source code
getPerSeqGcContent Source code
getPerSeqQualScores Source code
getPerTileSeqQuals Source code
getSeqDuplicationLevels Source code
getSeqLengthDist Source code
getSummary Man page Man page Man page Man page Man page
getSummary,FastqcData-method Man page
getSummary,FastqcDataList-method Man page
getSummary,FastqcFile-method Man page
getSummary,FastqcFileList-method Man page
getSummary,character-method Man page
ggdend Source code
importBowtie2Logs Man page
importBowtieLogs Man page Source code
importDuplicationMetrics Man page Source code
importHisat2Logs Man page Source code
importStarLogs Man page Source code
isCompressed Man page Source code
isValidFastqcDataList Source code
isValidFastqcFile Source code
isValidFastqcFileList Source code
isValidPwf Source code
isValidTheoreticalGC Source code
mData Man page
mData,TheoreticalGC-method Man page
makeSidebar Man page Source code
maxAdapterContent Man page Source code
path Man page Man page Man page Man page
path,FastqcData-method Man page
path,FastqcDataList-method Man page
path,FastqcFile-method Man page
path,FastqcFileList-method Man page
plotAdapterContent Man page
plotAdapterContent,FastqcData Man page
plotAdapterContent,FastqcData-method Man page
plotAdapterContent,FastqcDataList Man page
plotAdapterContent,FastqcDataList-method Man page
plotAdapterContent,FastqcFile Man page
plotAdapterContent,FastqcFile-method Man page
plotAdapterContent,FastqcFileList Man page
plotAdapterContent,FastqcFileList-method Man page
plotAdapterContent,character Man page
plotAdapterContent,character-method Man page
plotBaseQualities Man page
plotBaseQualities,FastqcData Man page
plotBaseQualities,FastqcData-method Man page
plotBaseQualities,FastqcDataList Man page
plotBaseQualities,FastqcDataList-method Man page
plotBaseQualities,FastqcFile Man page
plotBaseQualities,FastqcFile-method Man page
plotBaseQualities,FastqcFileList Man page
plotBaseQualities,FastqcFileList-method Man page
plotBaseQualities,character Man page
plotBaseQualities,character-method Man page
plotDuplicationLevels Man page
plotDuplicationLevels,FastqcData Man page
plotDuplicationLevels,FastqcData-method Man page
plotDuplicationLevels,FastqcDataList Man page
plotDuplicationLevels,FastqcDataList-method Man page
plotDuplicationLevels,FastqcFile Man page
plotDuplicationLevels,FastqcFile-method Man page
plotDuplicationLevels,FastqcFileList Man page
plotDuplicationLevels,FastqcFileList-method Man page
plotDuplicationLevels,character Man page
plotDuplicationLevels,character-method Man page
plotGcContent Man page
plotGcContent,FastqcData Man page
plotGcContent,FastqcData-method Man page
plotGcContent,FastqcDataList Man page
plotGcContent,FastqcDataList-method Man page
plotGcContent,FastqcFile Man page
plotGcContent,FastqcFile-method Man page
plotGcContent,FastqcFileList Man page
plotGcContent,FastqcFileList-method Man page
plotGcContent,character Man page
plotGcContent,character-method Man page
plotKmers Man page
plotKmers,FastqcData Man page
plotKmers,FastqcData-method Man page
plotKmers,FastqcDataList Man page
plotKmers,FastqcDataList-method Man page
plotKmers,FastqcFile Man page
plotKmers,FastqcFile-method Man page
plotKmers,FastqcFileList Man page
plotKmers,FastqcFileList-method Man page
plotKmers,character Man page
plotKmers,character-method Man page
plotNContent Man page
plotNContent,FastqcData Man page
plotNContent,FastqcData-method Man page
plotNContent,FastqcDataList Man page
plotNContent,FastqcDataList-method Man page
plotNContent,FastqcFile Man page
plotNContent,FastqcFile-method Man page
plotNContent,FastqcFileList Man page
plotNContent,FastqcFileList-method Man page
plotNContent,character Man page
plotNContent,character-method Man page
plotOverrepresentedSummary Man page
plotOverrepresentedSummary,FastqcData Man page
plotOverrepresentedSummary,FastqcData-method Man page
plotOverrepresentedSummary,FastqcDataList Man page
plotOverrepresentedSummary,FastqcDataList-method Man page
plotOverrepresentedSummary,FastqcFile Man page
plotOverrepresentedSummary,FastqcFile-method Man page
plotOverrepresentedSummary,FastqcFileList Man page
plotOverrepresentedSummary,FastqcFileList-method Man page
plotOverrepresentedSummary,character Man page
plotOverrepresentedSummary,character-method Man page
plotReadTotals Man page
plotReadTotals,FastqcDataList Man page
plotReadTotals,FastqcDataList-method Man page
plotReadTotals,FastqcFileList Man page
plotReadTotals,FastqcFileList-method Man page
plotReadTotals,character Man page
plotReadTotals,character-method Man page
plotSequenceContent Man page
plotSequenceContent,FastqcData Man page
plotSequenceContent,FastqcData-method Man page
plotSequenceContent,FastqcDataList Man page
plotSequenceContent,FastqcDataList-method Man page
plotSequenceContent,FastqcFile Man page
plotSequenceContent,FastqcFile-method Man page
plotSequenceContent,FastqcFileList Man page
plotSequenceContent,FastqcFileList-method Man page
plotSequenceContent,character Man page
plotSequenceContent,character-method Man page
plotSequenceLengthDistribution Man page
plotSequenceLengthDistribution,FastqcData Man page
plotSequenceLengthDistribution,FastqcData-method Man page
plotSequenceLengthDistribution,FastqcDataList Man page
plotSequenceLengthDistribution,FastqcDataList-method Man page
plotSequenceLengthDistribution,FastqcFile Man page
plotSequenceLengthDistribution,FastqcFile-method Man page
plotSequenceLengthDistribution,FastqcFileList Man page
plotSequenceLengthDistribution,FastqcFileList-method Man page
plotSequenceLengthDistribution,character Man page
plotSequenceLengthDistribution,character-method Man page
plotSequenceQualities Man page
plotSequenceQualities,FastqcData Man page
plotSequenceQualities,FastqcData-method Man page
plotSequenceQualities,FastqcDataList Man page
plotSequenceQualities,FastqcDataList-method Man page
plotSequenceQualities,FastqcFile Man page
plotSequenceQualities,FastqcFile-method Man page
plotSequenceQualities,FastqcFileList Man page
plotSequenceQualities,FastqcFileList-method Man page
plotSequenceQualities,character Man page
plotSequenceQualities,character-method Man page
plotSummary Man page
plotSummary,FastqcDataList Man page
plotSummary,FastqcDataList-method Man page
plotSummary,FastqcFileList Man page
plotSummary,FastqcFileList-method Man page
plotSummary,character Man page
plotSummary,character-method Man page
pwf Man page
readTotals Man page Source code
runFastQC Man page Source code
scale_fill_pwf Man page Source code
setAlpha Man page
setAlpha,PwfCols-method Man page
setColours Man page Man page
setColours,PwfCols-method Man page
show,FastqcData-method Man page
show,PwfCols-method Man page
transcriptomes Man page
transcriptomes,TheoreticalGC-method Man page
writeHtmlReport Man page Source code
UofABioinformaticsHub/fastqcReports documentation built on Nov. 20, 2017, 7:37 p.m.