readTotals: Get the read totals

In UofABioinformaticsHub/fastqcReports: Load FastqQC reports and other NGS related files

Get the read totals

Description

Get the read totals from one or more FASTQC reports

Usage

readTotals(x)

Arguments

x	Can be a FastqcData, FastqcDataList, FastpData, FastpDataList or file paths

Value

A tibble with the columns Filename and Total_Sequences

Examples

# Get the files included with the package
packageDir <- system.file("extdata", package = "ngsReports")
fl <- list.files(packageDir, pattern = "fastqc.zip", full.names = TRUE)

# Load the FASTQC data as a FastqcDataList object
fdl <- FastqcDataList(fl)

# Print the read totals
readTotals(fdl)

UofABioinformaticsHub/fastqcReports documentation built on July 23, 2024, 3:26 p.m.