pwf: Colours for PASS/WARN/FAIL

In UofABioinformaticsHub/fastqcReports: Load FastqQC reports and other NGS related files

Colours for PASS/WARN/FAIL

Description

Default colours for PASS/WARN/FAIL

Usage

pwf

Format

An object of class PwfCols of length 1.

Details

pwf is an object of class PwfCols supplied with the package and used as the default colouring. Colours correspond approximately to PASS, WARN and FAIL from the FASTQC reports, with the additional colour (MAX) included to indicate an extreme FAIL. In order, these colours in the default vector are green (rgb(0, 0.8, 0)), yellow (rgb(0.9, 0.9, 0.2)), red (rgb(0.8, 0.2, 0.2)) and white (rgb(1, 1, 1))

Examples

# Make a pie chart showing the default colours
pie(rep(1,4), labels = names(pwf), col = getColours(pwf))

UofABioinformaticsHub/fastqcReports documentation built on July 23, 2024, 3:26 p.m.