path: Return the File Paths from an object

In UofABioinformaticsHub/fastqcReports: Load FastqQC reports and other NGS related files

Return the File Paths from an object

Description

Return the File Paths from an object

Usage

## S4 method for signature '.FastqcFile'
path(object)

## S4 method for signature 'FastqcData'
path(object)

## S4 method for signature 'FastqcDataList'
path(object)

## S4 method for signature '.FastpFile'
path(object)

## S4 method for signature 'FastpData'
path(object)

## S4 method for signature 'FastpDataList'
path(object)

Arguments

object

An object of class .FastqcFile

Details

Obtains the file.path for objects of multiple classes

Value

A character vector of the file paths to the underlying FastQC reports

Examples

# Get the files included with the package
packageDir <- system.file("extdata", package = "ngsReports")
fl <- list.files(packageDir, pattern = "fastqc.zip", full.names = TRUE)

# Load the FASTQC data as a FastqcDataList object
fdl <- FastqcDataList(fl)
path(fdl)

UofABioinformaticsHub/fastqcReports documentation built on April 1, 2024, 5:29 p.m.