PwfCols-class: The PwfCols class and associated methods

In UofABioinformaticsHub/fastqcReports: Load FastqQC reports and other NGS related files

The PwfCols class and associated methods

Description

Define the PwfCols class and associated methods

Details

This is an object of with four colours in components named PASS, WARN, FAIL and MAX. Used to indicate these categories as defined on the standard plots from fastqc.

Value

An S4 object of class PwfCols

Slots

PASS

A vector of length 1, defining the colour for PASS in rgb format. Defaults to rgb(0, 0.8, 0)

WARN

A vector of length 1, defining the colour for WARN in rgb format. Defaults to rgb(0.9, 0.9, 0.2)

FAIL

A vector of length 1, defining the colour for FAIL in rgb format. Defaults to rgb(0.8, 0.2, 0.2)

MAX

A vector of length 1, defining the colour for an extreme FAIL or NA in rgb format. Defaults to rgb(1, 1, 1)

UofABioinformaticsHub/fastqcReports documentation built on July 23, 2024, 3:26 p.m.