Files in UvA-MAD/faradr

Tools for sequencing data analysis.

R/CombineCounts.R R/count.R R/fq.r R/qc.R R/spikes.r R/vis.r README.md man/A.design.plot.Rd man/Aplot.Rd man/B1.design.plot.Rd man/B1plot.Rd man/B2.design.plot.Rd man/B2plot.Rd man/C1.design.plot.Rd man/C1plot.Rd man/C2.design.plot.Rd man/C2plot.Rd man/C3.design.plot.Rd man/C3plot.Rd man/CombineCountTables.Rd man/CountTable.Rd man/D1plot.Rd man/D2plot.Rd man/GeneralQualityStats.Rd man/PlotAlignAnnot.Rd man/PlotCoverageAnnot.Rd man/PlotMMDist.Rd man/PlotMMFracDist.Rd man/PlotMeanReadQuality.Rd man/PlotNormalSpikeCounts.Rd man/PlotPerCycleQuality.Rd man/PlotReadLengthDistribution.Rd man/PlotSpikeCounts.Rd man/QualityTrimReads.Rd man/normalize_counts.Rd tests/test-all.R tests/testthat/test_fq.r tests/testthat/test_qc.r tests/testthat/test_vis.r