PlotMMFracDist: Plot fraction of mismatches and indels in alignment.
In UvA-MAD/faradr: Tools for sequencing data analysis.
Description
It is calculated by dividing read length
by edit distance (NM tag in bam file).
Usage
1
PlotMMFracDist(bamfile, plotfile)
Arguments
bamfile
string bamfile filepath
plotfile
string output png filepath
UvA-MAD/faradr documentation built on May 9, 2019, 9:41 p.m.
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Description
It is calculated by dividing read length by edit distance (NM tag in bam file).
Usage
1 | PlotMMFracDist(bamfile, plotfile)
|
Arguments
bamfile |
string bamfile filepath |
plotfile |
string output png filepath |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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