Files in UvA-MAD/faradr
Tools for sequencing data analysis.
.gitignore
DESCRIPTION
NAMESPACE
R/CombineCounts.R
R/count.R
R/fq.r
R/qc.R
R/spikes.r
R/vis.r
README.html
README.md
man/A.design.plot.Rd
man/Aplot.Rd
man/B1.design.plot.Rd
man/B1plot.Rd
man/B2.design.plot.Rd
man/B2plot.Rd
man/C1.design.plot.Rd
man/C1plot.Rd
man/C2.design.plot.Rd
man/C2plot.Rd
man/C3.design.plot.Rd
man/C3plot.Rd
man/CombineCountTables.Rd
man/CountTable.Rd
man/D1plot.Rd
man/D2plot.Rd
man/GeneralQualityStats.Rd
man/PlotAlignAnnot.Rd
man/PlotCoverageAnnot.Rd
man/PlotMMDist.Rd
man/PlotMMFracDist.Rd
man/PlotMeanReadQuality.Rd
man/PlotNormalSpikeCounts.Rd
man/PlotPerCycleQuality.Rd
man/PlotReadLengthDistribution.Rd
man/PlotSpikeCounts.Rd
man/QualityTrimReads.Rd
man/normalize_counts.Rd
tests/data/rRNA.gff
tests/data/sample.bam
tests/data/sample.bam.bai
tests/data/sample.fq.gz
tests/test-all.R
tests/testthat/test_fq.r
tests/testthat/test_qc.r
tests/testthat/test_vis.r
