C3.design.plot: Plot fraction of reads with partucular quality or higher per...

Description Usage Arguments Value

Description

4 line plots, for qualities 18, 20, 24 and 28, showing fraction of reads with one of those qualities per position in the read. One line per sample. Samples are explected to be separage fastq files. There is one plot per grouping factor. Samples colored by grouping factor. Grouping factors are extracted from design.table.

Usage

1
C3.design.plot(samples, fqc, design.table)

Arguments

samples

ShortReadQ object from package ShortRead

fqc

FastQA from package ShortRead

design.table

data.frame holds information about experimantal design

Value

list of plot objects


UvA-MAD/faradr documentation built on May 9, 2019, 9:41 p.m.