GeneralQualityStats: Get quality statistics.
In UvA-MAD/faradr: Tools for sequencing data analysis.
Description
Usage
Arguments
Value
Description
Calculates number of bases ans average lenght of the read
with quality above provided.
Usage
1
GeneralQualityStats(fastq, q.threshold)
Arguments
fastq
stiring path to fastq file
q.threshold
integer minimum allowed quality
Value
list with average read length and gnumber of bases
meeting quality requirements
UvA-MAD/faradr documentation built on May 9, 2019, 9:41 p.m.
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Description Usage Arguments Value
Description
Calculates number of bases ans average lenght of the read with quality above provided.
Usage
1 | GeneralQualityStats(fastq, q.threshold)
|
Arguments
fastq |
stiring path to fastq file |
q.threshold |
integer minimum allowed quality |
Value
list with average read length and gnumber of bases meeting quality requirements
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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