README.md

In UvA-MAD/faradr: Tools for sequencing data analysis.

faradr

Tools for sequencing data analysis.

Exploration and plotting tools usefull in Next Generation Sequencing data analysis.

Installation:

The package can be installed with devtools (by Hadley Wickham)

install.packages("devtools")
library(devtools)

# if using latest R version (>= 3.0.3)
# update devtools to the latest vesion
devtools::install_github("devtools")

# check version of devtools installed
packageVersion("devtools")

VLPB github repository is private one, therefore it is neccessery to authenticate in order to download package.

devtools > 1.5 uses github authentication tokens. To generate authentication token for R command line follow instructions from Github help Install faradr with devtools

install_github("UvA-MAD/faradr",
        auth_token="github_generated_token")

rembember to replace "github_generated_token" with your login credentials.

devtools = 1.5 uses github authentication tokens. To generate authentication token for R command line follow instructions from Github help Install faradr with devtools

install_github("UvA-MAD/faradr", auth_user="github_user_id",
        auth_token="github_generated_token")

rembember to replace "github_user_id" and "github_generated_token" with your login credentials.

devtools < 1.5 uses github password to authenticate.

install_github("UvA-MAD/faradr", auth_user="github_user_id",
        password="github_account_password")

rembember to replace "github_user_id" and "github_account_password" with your login credentials.

UvA-MAD/faradr documentation built on May 9, 2019, 9:41 p.m.