Files in VladaMilch/pdProbeRemap

What the package does (short line)

R/00_data.R R/01_FROM_schema.R R/02_FROM_pdInfoBuilder_utils.R R/03_FROM_pdInfoBuilder_main_parcing_functions.R R/04_FROM_pdInfoBuilder_V2NgsExpression.R R/05_FROM_pdBuilder_V2ExonTranscription.R R/05_modified_pdInfoBuilder_parsing_functions.R R/0_DataClasses.R R/10_0_makeOriginalPackageObject.R R/10_1_annotation2fasta.R R/10_2_star_command.R R/1_SAM_read.R R/2_processAlignments.R R/3_annotate.T.alignment.R R/4_filter.T.alignment.R R/5_annotate.G.alignment.R R/6_1_cigar2length.R R/6_2_cigar2_right.R R/6_3_cigar2_left.R R/6_4_annotate.non25M.genomic.transcript_wise.R R/6_getExonExonBorder.R R/7_alignments2probesetsRaw.R R/8_1_addControlProbes.R R/8_cleanProbeSets.R R/90_make_objects_for_reannotation.R R/91_new.R R/92_alignments2parsedData.R R/93_make_package_from_parsedData.R R/94_makeNewAnnotationPackage.R R/utils.R inst/doc/pdProbeRemap.R inst/doc/pdProbeRemap.Rmd inst/doc/pdProbeRemap.pdf man/Alignments.Rd man/Alignments_class_example.Rd man/Annotation_example.Rd man/alignments2parsedData.Rd man/alignments2probesetsRaw.Rd man/annotate.G.alignment.Rd man/annotate.T.alignment.Rd man/annotate.non25M.genomic.transcrits_wise.Rd man/annotation2fasta.Rd man/build_new_ParsedDataOld_object_PGF.Rd man/cigar2_left.Rd man/cigar2_right.Rd man/cigar2length.Rd man/cleanProbeSets.Rd man/filter.T.alignment.Rd man/getExonExonBorder.Rd man/makeNewAnnotationPackage.Rd man/makeOriginalPackageObject.Rd man/make_objects_for_reannotation.Rd man/processAlignments.Rd man/read.sam.Rd man/seed_example.Rd man/star.command.make.Rd tests/testthat.R tests/testthat/test_10_0.R tests/testthat/test_10_1.R tests/testthat/test_90.R tests/testthat/test_91.R tests/testthat/test_92.R vignettes/pdProbeRemap.Rmd