cigar2_right: cigar - to - length of the right exon mapping
In VladaMilch/pdProbeRemap: What the package does (short line)
Description
Usage
Arguments
Details
Value
Author(s)
See Also
View source: R/6_2_cigar2_right.R
Description
Length of the last M-region
Usage
1
cigar2_right(cigar_string)
Arguments
cigar_string
CIGAR character string
Details
If a probe maps exon-exon border region of a transcript,
it does not appear in the Genomic Alignment as a mapping with
CIGAR = "25M", but as mapping with xxM in the beginning of
the CIGAR string, and xxM in the end,
which represents length of the regions mapped to the left and right exons correspondingly.
The cigar2_right function gets length of the right exon mapping,
if CIGAR string has M of the right-most position.
Value
returns integer.
Author(s)
Vladislava Milchevskaya milchv@gmail.com
See Also
VladaMilch/pdProbeRemap documentation built on May 28, 2019, 3:21 p.m.
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Description Usage Arguments Details Value Author(s) See Also
View source: R/6_2_cigar2_right.R
Description
Length of the last M-region
Usage
1 | cigar2_right(cigar_string)
|
Arguments
cigar_string |
CIGAR character string |
Details
If a probe maps exon-exon border region of a transcript,
it does not appear in the Genomic Alignment as a mapping with
CIGAR = "25M", but as mapping with xxM in the beginning of
the CIGAR string, and xxM in the end,
which represents length of the regions mapped to the left and right exons correspondingly.
The cigar2_right function gets length of the right exon mapping,
if CIGAR string has M of the right-most position.
Value
returns integer.
Author(s)
Vladislava Milchevskaya milchv@gmail.com
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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