cigar2_left: cigar - to - length of the left exon mapping
In VladaMilch/pdProbeRemap: What the package does (short line)
Description
Usage
Arguments
Details
Value
Author(s)
See Also
View source: R/6_3_cigar2_left.R
Description
Length of the first M-region
Usage
1
cigar2_left(cigar_string)
Arguments
cigar_string
CIGAR character string
Details
If a probe maps exon-exon border region of a transcript,
it does not appear in the Genomic Alignment as a mapping with
CIGAR = "25M", but as mapping with xxM in the beginning of
the CIGAR string, and xxM in the end,
which represents length of the regions mapped
to the left and right exons correspondingly.
The cigar2_left function gets length of the left exon mapping,
if CIGAR string has <integer>M in the left-most position.
Value
returns integer.
Author(s)
Vladislava Milchevskaya milchv@gmail.com
See Also
VladaMilch/pdProbeRemap documentation built on May 28, 2019, 3:21 p.m.
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Description Usage Arguments Details Value Author(s) See Also
View source: R/6_3_cigar2_left.R
Description
Length of the first M-region
Usage
1 | cigar2_left(cigar_string)
|
Arguments
cigar_string |
CIGAR character string |
Details
If a probe maps exon-exon border region of a transcript,
it does not appear in the Genomic Alignment as a mapping with
CIGAR = "25M", but as mapping with xxM in the beginning of
the CIGAR string, and xxM in the end,
which represents length of the regions mapped
to the left and right exons correspondingly.
The cigar2_left function gets length of the left exon mapping,
if CIGAR string has <integer>M in the left-most position.
Value
returns integer.
Author(s)
Vladislava Milchevskaya milchv@gmail.com
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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