annotate.G.alignment: annotates probes genomic alignment
In VladaMilch/pdProbeRemap: What the package does (short line)
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Description
annotate probe genomic alignment with CIGAR = 25M only
Usage
1
annotate.G.alignment(GAlignment, Annotation)
Arguments
GAlignment
data.frame of the raw genomic alignment (output of processAlignments function)
Annotation
reference genome annotation, data.frame
Details
Raw genomic alignment data.frame subsetted for mappings with CIGAR = 25M only,
these are mapped to the genomic coordinates of exons from the Reference Annotation data.frame.
A probes that falls in the region of annotated exon, is mapped to all transcripts corresponding to the exon.
Value
a "data.frame".
Author(s)
Vladislava Milchevskaya milchv@gmail.com
See Also
VladaMilch/pdProbeRemap documentation built on May 28, 2019, 3:21 p.m.
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Description Usage Arguments Details Value Author(s) See Also
Description
annotate probe genomic alignment with CIGAR = 25M only
Usage
1 | annotate.G.alignment(GAlignment, Annotation)
|
Arguments
GAlignment |
|
Annotation |
reference genome annotation, |
Details
Raw genomic alignment data.frame subsetted for mappings with CIGAR = 25M only,
these are mapped to the genomic coordinates of exons from the Reference Annotation data.frame.
A probes that falls in the region of annotated exon, is mapped to all transcripts corresponding to the exon.
Value
a "data.frame".
Author(s)
Vladislava Milchevskaya milchv@gmail.com
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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