read.sam: Read SAM files.
In VladaMilch/pdProbeRemap: What the package does (short line)
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Reads SAM file creates a data.frame
Usage
1
read.sam(myfile)
Arguments
myfile
the name of the fasta file which the data are to be read from.
Details
This funtion reads SAM file reverts header to columns and outputs
a "data.frame".
Value
a data.frame.
Author(s)
Grischa Toedt, Vladislava Milchevskaya milchv@gmail.com
Examples
1
2
3
4
5
6
7
sam_file <-
dir(system.file("extdata",package="pdProbeRemap"),
pattern="example_drosophila.Aligned.out.sam",
full.names=TRUE)
SAM_list <- read.sam(sam_file)
SAM_list$x
SAM_list$header
VladaMilch/pdProbeRemap documentation built on May 28, 2019, 3:21 p.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Reads SAM file creates a data.frame
Usage
1 | read.sam(myfile)
|
Arguments
myfile |
the name of the fasta file which the data are to be read from. |
Details
This funtion reads SAM file reverts header to columns and outputs
a "data.frame".
Value
a data.frame.
Author(s)
Grischa Toedt, Vladislava Milchevskaya milchv@gmail.com
Examples
1 2 3 4 5 6 7 | sam_file <-
dir(system.file("extdata",package="pdProbeRemap"),
pattern="example_drosophila.Aligned.out.sam",
full.names=TRUE)
SAM_list <- read.sam(sam_file)
SAM_list$x
SAM_list$header
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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