RunDP: Main DPClust function that handles the various pipelines

In Wedge-Oxford/dpclust: DPClust - An R package for subclonal reconstruction of tumours using sequencing data

Main DPClust function that handles the various pipelines

Description

Main DPClust function that handles the various pipelines

Usage

RunDP(analysis_type, run_params, sample_params, advanced_params, outdir,
  cna_params = NULL, mutphasingfiles = NULL)

Arguments

analysis_type	Type of analysis to run: nd_dp (1d and nd clustering), replot_1d/replot_nd (recreate plots), reassign_muts_1d/reassign_muts_nd (reassign mutations)
run_params	List with run parameters (see make_run_params)
sample_params	List with sample parameters (see make_sample_params)
advanced_params	List with advanced parameters (see make_advanced_params)
outdir	Directory where the output will be saved
cna_params	List with copy number parameters - currently unsupported (Default: NULL)
mutphasingfiles	Mutation phasing files - currently unsupported (Default: NULL)

Author(s)

sd11

Wedge-Oxford/dpclust documentation built on July 6, 2024, 2:02 p.m.