get_mutation_preferences: Get mutation preferences table given a density and cluster...

In Wedge-Oxford/dpclust: DPClust - An R package for subclonal reconstruction of tumours using sequencing data

Get mutation preferences table given a density and cluster locations. The output table contains the CCF of the preferred given cluster locations, i.e. the cluster to which the SNV would've been assigned during clustering if those were the cluster locations

Description

Get mutation preferences table given a density and cluster locations. The output table contains the CCF of the preferred given cluster locations, i.e. the cluster to which the SNV would've been assigned during clustering if those were the cluster locations

Usage

get_mutation_preferences(GS.data, density, mut_assignments, clusterids,
  cluster_ccfs, no.muts, no.timepoints, no.iters, no.iters.burn.in)

Wedge-Oxford/dpclust documentation built on July 6, 2024, 2:02 p.m.