get_snv_assignment_ccfs: Fetch the CCFs of the clusters to which SNVs have been...

In Wedge-Oxford/dpclust: DPClust - An R package for subclonal reconstruction of tumours using sequencing data

Fetch the CCFs of the clusters to which SNVs have been assigned during MCMC into a big table

Description

Fetch the CCFs of the clusters to which SNVs have been assigned during MCMC into a big table

Usage

get_snv_assignment_ccfs(pi.h, S.i, no.muts, no.timepoints, no.iters,
  no.iters.burn.in)

Arguments

pi.h	The cluster CCFs
S.i	The mutation assignments to cluster ids
no.muts	Number of total SNVs
no.iters	The total number of iterations
no.iters.burn.in	The total number of iterations to use as burnin

Value

A matrix with a column for each SNV and a row for each to consider iteration with the cell containing the CCF

Author(s)

sd11 Get assignment ccfs for each snv

Wedge-Oxford/dpclust documentation built on July 6, 2024, 2:02 p.m.