calc_cluster_conf_intervals: Calculate confidence intervals on the cluster location

In Wedge-Oxford/dpclust: DPClust - An R package for subclonal reconstruction of tumours using sequencing data

Calculate confidence intervals on the cluster location

Description

Calculate confidence intervals on the cluster location

Usage

calc_cluster_conf_intervals(GS.data, mut_assignments, clusterids, no.muts,
  no.timepoints, no.iters, no.iters.burn.in)

Arguments

GS.data	MCMC output with assignments and cluster locations
mut_assignments	Final mutation to cluster assignments
clusterids	Clusterids to run through
no.muts	The total number of mutations
no.timepoints	Total number of samples in this dataset
no.iters	Total number of iterations
no.iters.burn.in	Number of iterations to use as burn-in

Value

A data.frame with the confidence intervals for each cluster

Author(s)

sd11

Wedge-Oxford/dpclust documentation built on July 6, 2024, 2:02 p.m.