Files in WubingZhang/MAGeCKFlute
Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens
.gitignore
DESCRIPTION
MAGeCKFlute.Rproj
NAMESPACE
NEWS
R/.ipynb_checkpoints/EnrichAnalyzer-checkpoint.R
R/.ipynb_checkpoints/EnrichSquare-checkpoint.R
R/.ipynb_checkpoints/EnrichedFilter-checkpoint.R
R/.ipynb_checkpoints/EnrichedGeneView-checkpoint.R
R/.ipynb_checkpoints/EnrichedView-checkpoint.R
R/.ipynb_checkpoints/IdentBarVIew-checkpoint.R
R/.ipynb_checkpoints/enrich.GSE-checkpoint.R
R/.ipynb_checkpoints/enrich.HGT-checkpoint.R
R/.ipynb_checkpoints/enrich.ORT-checkpoint.R
R/.ipynb_checkpoints/gsGetter-checkpoint.R
R/.ipynb_checkpoints/reexport-checkpoint.R
R/BarView.R
R/BatchRemove.R
R/ConsistencyView.R
R/DensityView.R
R/EnrichAB.R
R/EnrichAnalyzer.R
R/EnrichSquare.R
R/EnrichedFilter.R
R/EnrichedGeneView.R
R/EnrichedView.R
R/FluteMLE.R
R/FluteRRA.R
R/HeatmapView.R
R/IdentBarVIew.R
R/IncorporateDepmap.R
R/KeggPathwayView.R
R/MAView.R
R/MapRatesView.R
R/NormalizeBeta.R
R/RankView.R
R/ReadBeta.R
R/ReadRRA.R
R/ReadsgRRA.R
R/ScatterView.R
R/Selector.R
R/SquareView.R
R/TransGeneID.R
R/ViolinView.R
R/VolcanoView.R
R/enrich.GSE.R
R/enrich.HGT.R
R/enrich.ORT.R
R/gsGetter.R
R/hclustView.R
R/readGMT.R
R/reexport.R
R/sgRankView.R
README.md
inst/extdata/GeneID_Annotation_hsa.rds
inst/extdata/GeneID_Annotation_hsa_mmu.rds
inst/extdata/GeneID_Annotation_mmu.rds
inst/extdata/GeneID_Annotation_mmu_hsa.rds
inst/extdata/HOM_GeneID_Annotation_mmu_hsa.rds
inst/extdata/ProteinID_Annotation_hsa.rds
inst/extdata/ProteinID_Annotation_mmu.rds
inst/extdata/Zuber_Essential.rds
inst/extdata/corum.all.entrez.hsa.rds
inst/extdata/corum.all.entrez.mmu.rds
inst/extdata/go.all.entrez.mmu.rds
inst/extdata/kegg.all.entrez.hsa.rds
inst/extdata/kegg.all.entrez.mmu.rds
inst/extdata/reactome.all.entrez.hsa.rds
inst/extdata/reactome.all.entrez.mmu.rds
inst/extdata/testdata/countsummary.txt
inst/extdata/testdata/mle.gene_summary.txt
inst/extdata/testdata/rra.gene_summary.txt
inst/extdata/testdata/rra.sgrna_summary.txt
man/BarView.Rd
man/BatchRemove.Rd
man/ConsistencyView.Rd
man/CutoffCalling.Rd
man/DensityDiffView.Rd
man/DensityView.Rd
man/EnrichAB.Rd
man/EnrichAnalyzer.Rd
man/EnrichSquare.Rd
man/EnrichedFilter.Rd
man/EnrichedGeneView.Rd
man/EnrichedView.Rd
man/FluteMLE.Rd
man/FluteRRA.Rd
man/HeatmapView.Rd
man/IdentBarView.Rd
man/IncorporateDepmap.Rd
man/MAView.Rd
man/MapRatesView.Rd
man/NormalizeBeta.Rd
man/OmitCommonEssential.Rd
man/RankView.Rd
man/ReadBeta.Rd
man/ReadGMT.Rd
man/ReadRRA.Rd
man/ReadsgRRA.Rd
man/ResembleDepmap.Rd
man/ScatterView.Rd
man/Selector.Rd
man/SquareView.Rd
man/TransGeneID.Rd
man/ViolinView.Rd
man/VolcanoView.Rd
man/arrangePathview.Rd
man/enrich.GSE.Rd
man/enrich.HGT.Rd
man/enrich.ORT.Rd
man/getCols.Rd
man/getGeneAnn.Rd
man/getOrg.Rd
man/getOrtAnn.Rd
man/gsGetter.Rd
man/hclustView.Rd
man/loadDepmap.Rd
man/noEnrichPlot.Rd
man/normalize.loess.Rd
man/reexports.Rd
man/retrieve_gs.Rd
man/sgRankView.Rd
man/writeGMT.Rd
vignettes/MAGeCKFlute.Rmd
vignettes/MAGeCKFlute_enrichment.Rmd
vignettes/library.bib
