A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For GWAS

cattle50K | Genotyped by Bovine50K chip |

MVP.Data | To prepare data for MVP package |

MVP.EMMA.Vg.Ve | Estimate variance components using EMMA |

MVP.FarmCPU | Perform GWAS using FarmCPU method |

MVP.FaSTLMM.LL | Evaluation of the maximum likelihood using FaST-LMM method |

MVP.GEMMA.Vg.Ve | To estimate variance component using HE regression |

MVP.GLM | To perform GWAS with GLM model and get the P value of SNPs |

MVP.K.VanRaden | Calculate Kinship matrix by VanRaden method |

MVP.MLM | To perform GWAS with MLM model and get the P value of SNPs |

MVP.Numericalization | To convert character SNP genotpe to numerical |

MVP-package | a Memory efficient, Visualization enhanced, and Parallel... |

MVP.PCA | Principal Component Analysis |

MVP.Report | report and visualize the results |

MVP.Version | MVP.Version |

pig60K | Genotyped by pig 60k chip |

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