MVP.Data.impute: MVP.Data.impute: To impute the missing genotype Author:...

In XiaoleiLiuBio/MVP: Memory-Efficient, Visualize-Enhanced, Parallel-Accelerated GWAS Tool

MVP.Data.impute: To impute the missing genotype Author: Haohao Zhang Build date: Sep 12, 2018

Description

MVP.Data.impute: To impute the missing genotype Author: Haohao Zhang Build date: Sep 12, 2018

Usage

MVP.Data.impute(
  mvp_prefix,
  out = NULL,
  mrk_bycol = TRUE,
  method = "Major",
  ncpus = NULL,
  verbose = TRUE
)

Arguments

mvp_prefix	the prefix of mvp file
out	the prefix of output file
mrk_bycol	whether the markers are stored by columns in genotype (i.e. genotype is a n by m matrix)
method	'Major', 'Minor', "Middle"
ncpus	number of threads for imputing
verbose	whether to print the reminder

Value

NULL Output files: imputed genotype file

Examples

mvpPath <- file.path(system.file("extdata", "05_mvp", package = "rMVP"), "mvp")

MVP.Data.impute(mvpPath, tempfile("outfile"), ncpus=1)

XiaoleiLiuBio/MVP documentation built on Jan. 3, 2025, 5:59 a.m.