Files in XiaoleiLiuBio/MVP
Memory-Efficient, Visualize-Enhanced, Parallel-Accelerated GWAS Tool
.Rbuildignore
.github/workflows/sync2gitee.yml
.gitignore
CHANGELOG
DESCRIPTION
Dockerfile
LICENSE
NAMESPACE
R/MVP.BRENT.Vg.Ve.R
R/MVP.Data.r
R/MVP.EMMA.Vg.Ve.r
R/MVP.FaSTLMM.LL.r
R/MVP.FarmCPU.r
R/MVP.GLM.r
R/MVP.HE.Vg.Ve.R
R/MVP.K.VanRaden.r
R/MVP.Logging.R
R/MVP.MLM.r
R/MVP.PCA.r
R/MVP.Report.r
R/MVP.Utility.r
R/MVP.r
R/RcppExports.R
R/exports.R
R/zzz.R
README.md
data/pig60K.rda
devscripts/buildDoc.R
inst/extdata/01_vcf/mvp.vcf
inst/extdata/02_bfile/mvp.bed
inst/extdata/02_bfile/mvp.bim
inst/extdata/02_bfile/mvp.fam
inst/extdata/03_hapmap/mvp.hmp.txt
inst/extdata/04_numeric/mvp.map
inst/extdata/04_numeric/mvp.num
inst/extdata/05_mvp/mvp.geno.bin
inst/extdata/05_mvp/mvp.geno.desc
inst/extdata/05_mvp/mvp.geno.ind
inst/extdata/05_mvp/mvp.geno.map
inst/extdata/06_mvp-impute/mvp.imp.geno.bin
inst/extdata/06_mvp-impute/mvp.imp.geno.desc
inst/extdata/06_mvp-impute/mvp.imp.geno.ind
inst/extdata/06_mvp-impute/mvp.imp.geno.map
inst/extdata/07_other/mvp.phe
man/MVP.BRENT.Vg.Ve.Rd
man/MVP.Data.Bfile2MVP.Rd
man/MVP.Data.Hapmap2MVP.Rd
man/MVP.Data.Kin.Rd
man/MVP.Data.MVP2Bfile.Rd
man/MVP.Data.Map.Rd
man/MVP.Data.Numeric2MVP.Rd
man/MVP.Data.PC.Rd
man/MVP.Data.Pheno.Rd
man/MVP.Data.Rd
man/MVP.Data.VCF2MVP.Rd
man/MVP.Data.impute.Rd
man/MVP.EMMA.Vg.Ve.Rd
man/MVP.FaSTLMM.LL.Rd
man/MVP.FarmCPU.Rd
man/MVP.GLM.Rd
man/MVP.HE.Vg.Ve.Rd
man/MVP.Hist.Rd
man/MVP.K.VanRaden.Rd
man/MVP.MLM.Rd
man/MVP.PCA.Rd
man/MVP.PCAplot.Rd
man/MVP.Rd
man/MVP.Report.Density.Rd
man/MVP.Report.QQplot.Rd
man/MVP.Report.Rd
man/MVP.Version.Rd
man/MVP.calk.Rd
man/pig60K.Rd
man/reexports.Rd
results/1.jpg
results/10.jpg
results/11.jpg
results/2.jpg
results/2_2.jpg
results/3.jpg
results/4.jpg
results/5.jpg
results/6.jpg
results/7.jpg
results/8.jpg
results/9.jpg
results/MVP.PCA.jpg
results/MVP.PCA_2D.jpg
results/MVP.Phe_Distribution.Flower time.jpg
results/MVP.QQplot.trait.FarmCPU.jpg
results/MVP.QQplot.trait.GLM.jpg
results/MVP.QQplot.trait.MLM.jpg
results/MVP.Rectangular.Manhattan.trait.FarmCPU.jpg
results/MVP.Rectangular.Manhattan.trait.GLM.jpg
results/MVP.Rectangular.Manhattan.trait.MLM.jpg
results/MVP.SNP_Density.trait.GLM.trait.MLM.trait.FarmCPU.jpg
results/MVP.trait.FarmCPU.csv
results/MVP.trait.GLM.csv
results/MVP.trait.MLM.csv
results/Multi_Rectangular-Manhattan.trait.GLM.trait.MLM.trait.FarmCPU.jpg
results/QQplot.trait3.jpg
results/Rectangular-Manhattan.Fat percentage.jpg
results/Rectangular-Manhattan.trait3.jpg
results/illumilla_60K.jpg
results/mvp_logo.png
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/assoc.cpp
src/data_converter.cpp
src/fit_diago.cpp
src/impute.cpp
src/kinship.cpp
src/mvp_omp.h
tests/testthat.R
tests/testthat/rMVP.keep.geno
tests/testthat/rMVP.keep.genoImp
tests/testthat/rMVP.keep.genoInd
tests/testthat/rMVP.keep.kinship
tests/testthat/rMVP.keep.map
tests/testthat/rMVP.keep.pcs
tests/testthat/test_Data.R
tests/testthat/test_Utility.R
