MVP.Report.Density: SNP Density

In XiaoleiLiuBio/MVP: Memory-Efficient, Visualize-Enhanced, Parallel-Accelerated GWAS Tool

SNP Density

Description

SNP Density

Usage

MVP.Report.Density(
  Pmap,
  col = c("darkgreen", "yellow", "red"),
  dpi = 300,
  outpath = getwd(),
  memo = "MVP",
  bin.size = 1e+06,
  bin.max = NULL,
  file.type = "jpg",
  file.output = TRUE,
  verbose = TRUE
)

Arguments

Pmap	P value Map
col	The color vector
dpi	Number. Dots per inch for .jpg and .tiff files
outpath	Only when file.output = TRUE, determines the path of the output file
memo	Character. A text marker on output files
bin.size	the window size for counting SNP number
bin.max	maximum SNP number, for winows, which has more SNPs than bin.max, will be painted in same color
file.type	format of output figure
file.output	Whether to output the file
verbose	whether to print detail.

Value

Output file: <memo>.SNP_Density.<type>

Examples

data(pig60K, package = "rMVP")

MVP.Report.Density(pig60K, file.output=FALSE)

XiaoleiLiuBio/MVP documentation built on Sept. 27, 2024, 7:44 a.m.