MVP.Data.Pheno: MVP.Data.Pheno: To clean up phenotype file Author: Haohao...

In XiaoleiLiuBio/MVP: Memory-Efficient, Visualize-Enhanced, Parallel-Accelerated GWAS Tool

MVP.Data.Pheno: To clean up phenotype file Author: Haohao Zhang Build date: Sep 12, 2018

Description

MVP.Data.Pheno: To clean up phenotype file Author: Haohao Zhang Build date: Sep 12, 2018

Usage

MVP.Data.Pheno(
  pheno_file,
  out = "mvp",
  cols = NULL,
  header = TRUE,
  sep = "\t",
  missing = c(NA, "NA", "-9", 9999),
  verbose = TRUE
)

Arguments

pheno_file	the name of phenotype file
out	the name of output file
cols	selected columns
header	whether the file contains header
sep	seperator of the file
missing	the missing value
verbose	whether to print detail.

Value

NULL Output files: cleaned phenotype file

Examples

phePath <- system.file("extdata", "07_other", "mvp.phe", package = "rMVP")

MVP.Data.Pheno(phePath, out=tempfile("outfile"))

XiaoleiLiuBio/MVP documentation built on April 11, 2024, 1:20 a.m.